rs32185826 SNP Detail

Summary

• ID
  rs32185826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143024452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTAACAC GCACTGTCTC GCCATGACGG AAATGGAACC
  GAAATACAGA ACTGTATATA TATATATATA TATATATATA TATATATATA TATCCTAGCG
  Y
  AAGAAGTTTC AAAGATAGGA CTGCCAGGAA TACCCCTGAA CACCATAAAG AATAGCTTCG
  TCTCTTTGAA GCAAGTGGAC AACCTCGCCC ATGCACTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45617551	mCV25366609	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss147779105	ENSMUSSNP3662192	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321403821	CHEV_4_142887785	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32185826					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143024452 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604188	regulatory region 604188	1381 bp distal
Rr604189	regulatory region 604189	86 bp distal
Rr604190	regulatory region 604190	429 bp proximal
Rr604191	regulatory region 604191	1571 bp proximal
Tssr44447	transcription start site region 44447	1393 bp downstream
Tssr44448	transcription start site region 44448	1583 bp downstream
Tssr44449	transcription start site region 44449	1616 bp downstream