rs32180110 SNP Detail

Summary

• ID
  rs32180110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCTTGAAT TCTTAGAAGC ATTAAACACT AATAGCATGA
  AGAGGTAACA TTTCTGATTA GTCCTGACCA CATATAGCTT TTCCTCTAAG AAAAGAATTT
  Y
  TTAATTTGCT TCTTATTTAT AAGGAAAATG CTCAGACAAA ACAATAACTT GCCCCTTGGT
  CTTGCAAACT TTATATGCCC CAGTATAGGG GAACACCAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48134350	NES11822639	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs32180110					SNP	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134350	NES11822639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417946 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	Intron
Rr640649	regulatory region 640649	668 bp distal
Rr640650	regulatory region 640650	567 bp proximal
Rr640651	regulatory region 640651	879 bp proximal
Tssr63950	transcription start site region 63950	578 bp downstream
Tssr63951	transcription start site region 63951	593 bp downstream
Tssr63952	transcription start site region 63952	624 bp downstream
Tssr63953	transcription start site region 63953	677 bp downstream
Tssr63954	transcription start site region 63954	740 bp downstream
Tssr63955	transcription start site region 63955	769 bp downstream
Tssr63956	transcription start site region 63956	855 bp downstream