rs32178301 SNP Detail

Summary

• ID
  rs32178301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137004045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GTGCTAAAAG GAAGCCTCCA
  Y
  AGCCTTCCAG TTCCTAAGCA GAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45616535	mCV22552809	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss321362841	CHEV_4_136832649	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32178301					SNP	C	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137004045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15125	CpG island 15125	within coordinates
Rr602575	regulatory region 602575	1615 bp distal
Rr602576	regulatory region 602576	265 bp proximal
Rr602577	regulatory region 602577	766 bp proximal
Tssr1345	transcription start site region 1345	748 bp upstream
Tssr39739	transcription start site region 39739	766 bp upstream
Tssr39740	transcription start site region 39740	853 bp upstream
Wnt4	wingless-type MMTV integration site family, member 4	901 bp upstream