rs32171415 SNP Detail

Summary

• ID
  rs32171415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA TTGGCGGCTG CTCCCGGCGT
  Y
  CGCGGTGCAG CCGGCTGCAA AGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45615903	mCV22914085	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss321354365	CHEV_4_135728613	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32171415					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	within coordinates
E2f2	E2F transcription factor 2	mRNA-UTR
Rr367754	regulatory region 367754	244 bp downstream
Rr398609	regulatory region 398609	1889 bp upstream
Rr602302	regulatory region 602302	294 bp distal
Tssr39670	transcription start site region 39670	410 bp downstream
Tssr39671	transcription start site region 39671	303 bp downstream
Tssr39672	transcription start site region 39672	271 bp downstream
Tssr39673	transcription start site region 39673	256 bp downstream
Tssr39674	transcription start site region 39674	119 bp downstream
Tssr39675	transcription start site region 39675	within coordinates
Tssr39676	transcription start site region 39676	152 bp upstream
Tssr39677	transcription start site region 39677	247 bp upstream
Tssr39678	transcription start site region 39678	469 bp upstream
Tssr44029	transcription start site region 44029	375 bp upstream
Tssr44030	transcription start site region 44030	94 bp upstream
Tssr44031	transcription start site region 44031	340 bp downstream