rs32171161 SNP Detail

Summary

• ID
  rs32171161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132613687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTAGGGGA AATTGGGGCA CCATTCTCCT TGGAAGGGCC
  TACATCAAAC CCTATCTGTT CTCACTACTG GAATACTGGA AGCCAAGCTC TTTGGGGGAA
  R
  TGGGTGTTAA GATCATCAAC ACTGCCTCAA TTTAGTGTCT TGTTTTATTT GGGGGGGTGT
  TCTAGACAGG GTTTCTCTGT ATAGCCCTGG CTGTCCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45615813	mCV24822079	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss147478684	ENSMUSSNP3696413	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32171161					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132613687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	1385 bp distal
Gm13033	predicted gene 13033	within coordinates
Gm70413	predicted gene, 70413	160 bp downstream
Rr601102	regulatory region 601102	1835 bp distal
Rr601103	regulatory region 601103	1063 bp distal
Rr601104	regulatory region 601104	1284 bp proximal
Rr601105	regulatory region 601105	1468 bp proximal
Rr601106	regulatory region 601106	1578 bp proximal
Stx12	syntaxin 12	1918 bp upstream
Tssr39426	transcription start site region 39426	1824 bp downstream
Tssr43723	transcription start site region 43723	1875 bp upstream
Tssr43724	transcription start site region 43724	1853 bp upstream
Tssr43725	transcription start site region 43725	1586 bp upstream