rs32160966 SNP Detail

Summary

• ID
  rs32160966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAATGGTG GCGCACGCCT
  TTAACCCCAG TGCTTGGAAG GCAGAGGCAG GTGGATTTCT GAGTTTGAGG CCAGCCTGGT
  CTACAAAGTG AGTTCCAGGA CAGCCAGGGC TACACCGAGA AACCCTGTCT CACAAAAACA
  AAAACAAAAA CAAAAACAAA CAAACAAAAA TTTGTGTAGA AGAAACCTGG AGGTGTTTGA
  Y
  TCAGGAAGGA AGAGTGCTGG GTCCTGTTGG GGAAAATGAC CTGACAAACT CTGGACCCTC
  ACCCACGCTG TGCCTGTCAA GGGCGGGGCA GAGTTTGGGA GAGTGGAAAG GAGCTCTTTA
  CTAGAACAAA GACTCCCGAC CTGGACTGTC CTACATTTGA CTGCCAATTC TCAGATCAGC
  GAATCTGTGA ATGACCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45614461	mCV22914083	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32160966					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	528 bp proximal
E2f2	E2F transcription factor 2	969 bp upstream
Rr367754	regulatory region 367754	643 bp upstream
Rr602302	regulatory region 602302	479 bp proximal
Tssr39670	transcription start site region 39670	841 bp upstream
Tssr39671	transcription start site region 39671	942 bp upstream
Tssr39672	transcription start site region 39672	971 bp upstream
Tssr39673	transcription start site region 39673	1003 bp upstream
Tssr39674	transcription start site region 39674	1133 bp upstream
Tssr39675	transcription start site region 39675	1241 bp upstream
Tssr39676	transcription start site region 39676	1425 bp upstream
Tssr39677	transcription start site region 39677	1520 bp upstream
Tssr39678	transcription start site region 39678	1742 bp upstream
Tssr44029	transcription start site region 44029	893 bp downstream
Tssr44030	transcription start site region 44030	1176 bp downstream
Tssr44031	transcription start site region 44031	1613 bp downstream