rs32153554 SNP Detail

Summary

• ID
  rs32153554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154411206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT GGCTCAGAAT GAAGGGGCAT
  K
  TCTTGCAGTC TTCTGGGTAC CCAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45613555	mCV22602548	ABI	CRAMUS_MOUSE	f	SNP		T	T				G		T
ss46765991	NES10931827	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G		G	T	T	G		G	T	G	G		G
ss148102221	ENSMUSSNP3542586	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321439178	CHEV_4_153700858	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32153554					SNP	T	T	T	T	T	G	G	G	T	T	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765991	NES10931827	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154411206 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15438	CpG island 15438			1716 bp proximal
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606135	regulatory region 606135			991 bp distal
Rr606136	regulatory region 606136			1789 bp proximal
Rr606137	regulatory region 606137			1845 bp proximal