rs32152153 SNP Detail

Summary

• ID
  rs32152153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117164154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGCTGAC AGCCAGCAGC TATCACCAGA CGTGTGAGGG
  AAGAGCCTCT AGATGGTCCC AGCTCCCAGC TGAGCATCCA ACATCTGGAA CAGGCACAGC
  Y
  GACCCCTCGG TGCCCTGCTG GGATTCCTGA CCCCAAAGAT TGTGGAACAA AATGGAACAG
  TTGCTTCGTA CTGCTCAGAC TAGAGGTAAT TAGTGACGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45613247	mCV22658862	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147287180	ENSMUSSNP3888776	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32152153					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117164154 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598114	regulatory region 598114			1958 bp distal
Rr598115	regulatory region 598115			1067 bp distal