rs32147208 SNP Detail

Summary

• ID
  rs32147208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACATGC ATGCAAGCAA
  AACACTAATT CACACAAAGT AAAAATAAAT TATTTTTTAA AAGAGAGAAA AAATGGCAAG
  GAGTTACTAA ATAAAAAGCC CAGAGCCAGG GCTCTCACTC CTATAGGCCG ACGCTCAGGA
  GTGAGGATGC TGTCATAAGT CCTCAGAATT TCTAGAACCT CCAGAAAGTG GAAGCCAGCC
  Y
  GGGCTACTTG AGAAACTTGT ATAAAAACAG AACAAAGGAG ACAGGGCAGC ACCTTTAATC
  CCAGCACCTG GAGGGAGAGA AAGGTGCGCC TCTGAGTTCG AAGGTCAGCC TGGTCTACAT
  AGTAAATTCC AAAGCAGCCA GGGCTACACA GTGAGACCCT GCTTCGAAAA CAAACAAACA
  TTTCATCAAA GTTAAAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45612567	mCV22902704	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	C
ss147739648	ENSMUSSNP2761064	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32147208					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1082 bp distal
Rr603781	regulatory region 603781			53 bp proximal
Rr603782	regulatory region 603782			1231 bp proximal
Rr603783	regulatory region 603783			1504 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant