rs32143608 SNP Detail

Summary

• ID
  rs32143608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75941350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAGCTAC CTCAGGGAAG CTAAACATAA AATACCTATA
  AATGTATATG ATTTTCATTC ATTAAAAATT ATAAAATATA TTTAAATATT GTGAGCCTGA
  Y
  AGTGAGGGAC TAGAAGAGGC TTCAGAATAT CTTCTCATCC ATTCTGTCAG CTATCAACTT
  TTCAAGATCA ATTATTATGA ATATCACTGA AAGTCATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45611967	mCV24420113	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146575981	ENSMUSSNP4211836	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32143608					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75941350 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594065	regulatory region 594065			960 bp distal
Rr594066	regulatory region 594066			838 bp proximal