rs32139577 SNP Detail

Summary

• ID
  rs32139577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130007579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTCATT CCTGTAGCAA
  ACAGTATGAA GCAGGCACTG TTACCTCAGG CTCCTGAGGC TTAGTGAAGG TAAGTGAGCT
  CCCAGTGCGC TGATACGTTT TCCTGAAACT ACCTCTTTCA TTCAAAGAGA CAGAACTTTC
  TCCAGACCTA GCAGAGAAGT TAATGTGCCT TGAGATCAGT AAAGACCAGG TACTCGATCC
  R
  TTGTCTGTCA TACTACGTAC TCAGCGTGTG TAAGTTTAAC CTGCCTTTAA GAGAACAGTG
  TAACCAACCT TACCTGCCTT GGATTCCTCA TGACCCAAGC GAAATGCAGA GCTTTCCGTT
  TAAGTTATAC ACTCCCATGC CCTGACCCAG AACAGTGTCT GTGTTGTAGT TATTTGCTGG
  AGCAGCCAAT GTCTCTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45611750	mCV22590314	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147460132	ENSMUSSNP6373489	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32139577					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130007579 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1789 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	1129 bp distal