rs32129792 SNP Detail

Summary

• ID
  rs32129792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134640807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GACTGGGCTC AGTCAGAGGG
  Y
  CAGCCAGAGC TACACAGTGA GTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45610730	mCV22753215	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss321349932	CHEV_4_134469411	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32129792					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134640807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	1063 bp proximal
Rr601858	regulatory region 601858	within coordinates
Rr601859	regulatory region 601859	151 bp proximal
Rr601860	regulatory region 601860	672 bp proximal
Rr601861	regulatory region 601861	1509 bp proximal
Tmem50a	transmembrane protein 50A	Intron
Tssr39578	transcription start site region 39578	1593 bp upstream
Tssr43943	transcription start site region 43943	1444 bp downstream
Tssr43944	transcription start site region 43944	1479 bp downstream
Tssr43945	transcription start site region 43945	1514 bp downstream