rs32126219 SNP Detail

Summary

• ID
  rs32126219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171674759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTCTGA ACTAAATCAG
  TCCTCCTTTG ACTTGTGCTA CAGCTTCTGC CACAGCAATG GAATCTGAAC ATACATCATT
  CATCCTGCAT CGGTGATAGC CTTTTCTAGT CTTTGTTTCT CCTTTAGAAG CATGGCCTCG
  TCTTACTCTT CCCATTTCTG GTCCGCTATA TGGAAGTTGG GAAATAAGCC TAGTCAGCTG
  R
  TGTTGTCGCT GTGAGACATT TCTTCTTTAC CTGGATCCTA AGGTTTCTGC AACTATTTGG
  TCTGCCTCAT CAATTTCTTG TTAGCTTATA AGACCCTGTC TCAAATTTTT TTTTGCATCA
  ACATAATTGA AACCACCATT CATATGTACT ATCCAGATAT CCATAAGTGC TATTTCATTG
  CACATTATTT GTTATCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45109281	mCV24401891	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss146176007	ENSMUSSNP6793851	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss320121274	CHEV_1_173777323	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32126219					SNP	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171674759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423403	regulatory region 423403			1827 bp distal
Rr423404	regulatory region 423404			1674 bp proximal
Tssr291	transcription start site region 291			1609 bp upstream
Tssr10105	transcription start site region 10105			1508 bp downstream
Tssr10106	transcription start site region 10106			1474 bp downstream
Tssr10107	transcription start site region 10107			1457 bp downstream
Tssr10108	transcription start site region 10108			1344 bp downstream
Tssr10109	transcription start site region 10109			855 bp upstream
Tssr10110	transcription start site region 10110			876 bp upstream
Tssr10111	transcription start site region 10111			1191 bp upstream
Tssr15121	transcription start site region 15121			1653 bp upstream