rs32120114 SNP Detail

Summary

• ID
  rs32120114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152368661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATGTAG AACGACCCCA
  AGCACAAGGG TCTTCAGAGC CCAAACAAGT TCTATTGAGC AGGCGTCCCA TGTGGCCTGC
  CTCAGTTTCC CTATCTCTAA GAGTGAATGA CCATGATACA TCTCTCAGGG CTGTTTGAAG
  AACTCTCCCG GTCTGTGTGC CCTCGCACTT GAATGGACCA GGTGTGAGAG GTAGTGAGGG
  Y
  CCTTTGTTAG GGTCAGCCTT CAGCACGTGG GCCCCAATTG AGGCCCCTCA GTCTTAATGA
  CCTTTGCCCT CTTGGAGACT TGCCCCACTT TAGCTAAAGC ACAACACCAT GGGTATATAA
  CAGCCACCTG GACCCCTGTT AGTGTCCCCA TGCTCAAAAT TCCACCATAT TGCCTGTCTC
  CCACTATGTC GGCCGCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45609902	mCV23461080	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148080291	ENSMUSSNP6862498	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321434061	CHEV_4_151658313	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32120114					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152368661 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15403	CpG island 15403			132 bp distal
Cpgi15404	CpG island 15404			1894 bp proximal
Gpr153	G protein-coupled receptor 153			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Hes3	hes family bHLH transcription factor 3			1768 bp downstream
Rr605825	regulatory region 605825			809 bp distal
Rr605826	regulatory region 605826			193 bp distal
Rr605827	regulatory region 605827			1491 bp proximal