rs32116368 SNP Detail

Summary

• ID
  rs32116368
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTAGG AACCCAGAGC
  CCCATGCTTG CTAGGCAAGG GCCCCAACCC TGATCAACGC TTTAGCAGGC GTCCTTTTGC
  TCAAGTCTAG AGCGTCACTG GTGCCAACTC TCCAACACAG GGAGGAATTG GCTTTGCTTA
  ATTTTGCTGC AGAGTGGGCT GGCCCTGCTA AATCCAGGGT ACCGGGCACT TAACACTGTG
  W
  GGTCGCTGTG CGGAGCTAGA CTCTGGGCGC TCCCGTTTTT TCCTCACCAC CCAGGTGTCC
  ATTTTCTCTT TGCCGCGACG TGCCTGCATC CTTTTCTGCC TTGGAATTAT AATCGAAACA
  CTCGGTTCAG TCGTGAGAAA CATGTTTCAT ATATGCAACG GGTGCTCCGA TGTTTCTACG
  ACTAGCCTTA GGAGCCTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47127622	NES11595310	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	A	A		A	A		T
ss145643892	ENSMUSSNP3128685	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss322394791	CHEV_7_117308090	CHEVERUD	SCREENING_POP	f	SNP												A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32116368					SNP	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127622	NES11595310	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763783 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	166 bp distal
Rr653199	regulatory region 653199	1290 bp distal
Rr653200	regulatory region 653200	1311 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	256 bp distal
Rr653203	regulatory region 653203	342 bp proximal
Rr653204	regulatory region 653204	349 bp proximal
Rr653205	regulatory region 653205	397 bp proximal
Rr653206	regulatory region 653206	420 bp proximal
Rr653207	regulatory region 653207	1474 bp proximal
Rr653208	regulatory region 653208	1907 bp proximal
Tssr2367	transcription start site region 2367	305 bp downstream
Tssr2368	transcription start site region 2368	1650 bp downstream
Tssr68492	transcription start site region 68492	255 bp downstream
Tssr74253	transcription start site region 74253	292 bp downstream
Tssr74254	transcription start site region 74254	1776 bp downstream