rs32116365 SNP Detail

Summary

• ID
  rs32116365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACATCCT GGGCTCAGTT
  TTCTTAGGAA CCCAGAGCCC CATGCTTGCT AGGCAAGGGC CCCAACCCTG ATCAACGCTT
  TAGCAGGCGT CCTTTTGCTC AAGTCTAGAG CGTCACTGGT GCCAACTCTC CAACACAGGG
  AGGAATTGGC TTTGCTTAAT TTTGCTGCAG AGTGGGCTGG CCCTGCTAAA TCCAGGGTAC
  Y
  GGGCACTTAA CACTGTGAGG TCGCTGTGCG GAGCTAGACT CTGGGCGCTC CCGTTTTTTC
  CTCACCACCC AGGTGTCCAT TTTCTCTTTG CCGCGACGTG CCTGCATCCT TTTCTGCCTT
  GGAATTATAA TCGAAACACT CGGTTCAGTC GTGAGAAACA TGTTTCATAT ATGCAACGGG
  TGCTCCGATG TTTCTACGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47127619	NES11595305	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	T	T	C	T	C
ss145643884	ENSMUSSNP4231242	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32116365					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127619	NES11595305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763765 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	148 bp distal
Rr653199	regulatory region 653199	1272 bp distal
Rr653200	regulatory region 653200	1293 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	238 bp distal
Rr653203	regulatory region 653203	360 bp proximal
Rr653204	regulatory region 653204	367 bp proximal
Rr653205	regulatory region 653205	415 bp proximal
Rr653206	regulatory region 653206	438 bp proximal
Rr653207	regulatory region 653207	1492 bp proximal
Rr653208	regulatory region 653208	1925 bp proximal
Tssr2367	transcription start site region 2367	323 bp downstream
Tssr2368	transcription start site region 2368	1668 bp downstream
Tssr68492	transcription start site region 68492	237 bp downstream
Tssr74253	transcription start site region 74253	310 bp downstream
Tssr74254	transcription start site region 74254	1794 bp downstream