rs32115962 SNP Detail

Summary

• ID
  rs32115962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCCCGTG GTCCCGGGAA
  GACCGGACAA AAGCCACCAC GTGGCTCACA TCCTGGGCTC AGTTTTCTTA GGAACCCAGA
  GCCCCATGCT TGCTAGGCAA GGGCCCCAAC CCTGATCAAC GCTTTAGCAG GCGTCCTTTT
  GCTCAAGTCT AGAGCGTCAC TGGTGCCAAC TCTCCAACAC AGGGAGGAAT TGGCTTTGCT
  Y
  AATTTTGCTG CAGAGTGGGC TGGCCCTGCT AAATCCAGGG TACCGGGCAC TTAACACTGT
  GAGGTCGCTG TGCGGAGCTA GACTCTGGGC GCTCCCGTTT TTTCCTCACC ACCCAGGTGT
  CCATTTTCTC TTTGCCGCGA CGTGCCTGCA TCCTTTTCTG CCTTGGAATT ATAATCGAAA
  CACTCGGTTC AGTCGTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47127616	NES11595303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		T	T	T	T		C
ss322394790	CHEV_7_117308028	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32115962					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127616	NES11595303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763721 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	104 bp distal
Rr653199	regulatory region 653199	1228 bp distal
Rr653200	regulatory region 653200	1249 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	194 bp distal
Rr653203	regulatory region 653203	404 bp proximal
Rr653204	regulatory region 653204	411 bp proximal
Rr653205	regulatory region 653205	459 bp proximal
Rr653206	regulatory region 653206	482 bp proximal
Rr653207	regulatory region 653207	1536 bp proximal
Rr653208	regulatory region 653208	1969 bp proximal
Tssr2367	transcription start site region 2367	367 bp downstream
Tssr2368	transcription start site region 2368	1712 bp downstream
Tssr68492	transcription start site region 68492	193 bp downstream
Tssr74253	transcription start site region 74253	354 bp downstream
Tssr74254	transcription start site region 74254	1838 bp downstream