rs32115959 SNP Detail

Summary

• ID
  rs32115959
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATTGA GCGGGGTTAA
  AAGGAACGTC TCGCCCCCTG CTGGCGCCCG TGGTCCCGGG AAGACCGGAC AAAAGCCACC
  ACGTGGCTCA CATCCTGGGC TCAGTTTTCT TAGGAACCCA GAGCCCCATG CTTGCTAGGC
  AAGGGCCCCA ACCCTGATCA ACGCTTTAGC AGGCGTCCTT TTGCTCAAGT CTAGAGCGTC
  M
  CTGGTGCCAA CTCTCCAACA CAGGGAGGAA TTGGCTTTGC TTAATTTTGC TGCAGAGTGG
  GCTGGCCCTG CTAAATCCAG GGTACCGGGC ACTTAACACT GTGAGGTCGC TGTGCGGAGC
  TAGACTCTGG GCGCTCCCGT TTTTTCCTCA CCACCCAGGT GTCCATTTTC TCTTTGCCGC
  GACGTGCCTG CATCCTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47127613	NES11595300	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C		A	A	A	A		C
ss322394789	CHEV_7_117307986	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32115959					SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127613	NES11595300	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763679 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	62 bp distal
Rr653199	regulatory region 653199	1186 bp distal
Rr653200	regulatory region 653200	1207 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	152 bp distal
Rr653203	regulatory region 653203	446 bp proximal
Rr653204	regulatory region 653204	453 bp proximal
Rr653205	regulatory region 653205	501 bp proximal
Rr653206	regulatory region 653206	524 bp proximal
Rr653207	regulatory region 653207	1578 bp proximal
Tssr2367	transcription start site region 2367	409 bp downstream
Tssr2368	transcription start site region 2368	1754 bp downstream
Tssr68492	transcription start site region 68492	151 bp downstream
Tssr74253	transcription start site region 74253	396 bp downstream
Tssr74254	transcription start site region 74254	1880 bp downstream