rs32110493 SNP Detail

Summary

• ID
  rs32110493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109765901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTAAGA CCCTTCCTCA
  CCTCCTTGTA TGGGAGTCCC TGGGGAAACT TGAGTGCTGA CTTCACCGTG CTGGGATTTT
  CCTCAGAGTA CCTGGGGGAT TAAAAATGTG CCGTTTTTAT GGCACAGAAA AAGAGAGAAC
  ACAGGTTGTT CTAGTCATGA AGGAAAGGTA CTGAATCCCG TTTATAAGTT TACCACGAGA
  R
  CTTTGTTTCG TTTTTTACTT TAAATTTTGT TTATTTTATT ATTTTATTTA TTTATTTATT
  TATTTATTTA TTTTGGTTTT TTGAGACAGG GTTTCTCTAT AAGCCCTGGC TGTCCTGGAA
  CTCACTTTGT AGCCCAGGCT GGCCTTGAAC TCAGAAATCC GCCTGCCTCT GCCTCCCGAG
  TGCTGGGATT AAAGGCGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47127664	NES11595162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	G		G	A	G		G
ss322394802	CHEV_7_117310208	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32110493					SNP	A	A	A	A	A	G	G	A	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127664	NES11595162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109765901 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	1759 bp upstream
Rr1426	regulatory region 1426	173 bp downstream
Rr653201	regulatory region 653201	1770 bp distal
Rr653203	regulatory region 653203	1755 bp distal
Rr653204	regulatory region 653204	1699 bp distal
Rr653205	regulatory region 653205	1700 bp distal
Rr653206	regulatory region 653206	1129 bp distal
Rr653207	regulatory region 653207	212 bp distal
Rr653208	regulatory region 653208	within coordinates
Tssr2367	transcription start site region 2367	1768 bp upstream
Tssr2368	transcription start site region 2368	435 bp upstream
Tssr74253	transcription start site region 74253	1819 bp upstream
Tssr74254	transcription start site region 74254	331 bp upstream