rs32110488 SNP Detail

Summary

• ID
  rs32110488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109765683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAGCATT TAAATAGAAA TGGCTCTCTG GTGGGTTTTC
  CCCTGCGTTA GTCATGCAAA TGCTCTATGC CTCACTTACC ACTCAGTTTC GGTGCCGGGA
  Y
  GGTTCTTTTG CACGCGTCCT GCTAAGACCC TTCCTCACCT CCTTGTATGG GAGTCCCTGG
  GGAAACTTGA GTGCTGACTT CACCGTGCTG GGATTTTCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47127658	NES11595160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32110488					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127658	NES11595160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109765683 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	1541 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr653201	regulatory region 653201	1552 bp distal
Rr653203	regulatory region 653203	1537 bp distal
Rr653204	regulatory region 653204	1481 bp distal
Rr653205	regulatory region 653205	1482 bp distal
Rr653206	regulatory region 653206	911 bp distal
Rr653207	regulatory region 653207	within coordinates
Rr653208	regulatory region 653208	7 bp proximal
Tssr2367	transcription start site region 2367	1550 bp upstream
Tssr2368	transcription start site region 2368	217 bp upstream
Tssr74253	transcription start site region 74253	1601 bp upstream
Tssr74254	transcription start site region 74254	113 bp upstream