rs32110485 SNP Detail

Summary

• ID
  rs32110485
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109765531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCTTAC ATATAAATAG
  TAAATGAAAG GAAATAAAAT CAATGTTATA AATTCAGGAC TCTGCAGAAA AGGACCCCCT
  GCCCTGAGAC CTGGAGTGTT GCCTGGCCTC TACAGGAGGA GTCATGCAAA GTCACTAGGC
  CTGGGTTTCT CTCTCTCTTT ACAGAAGGCC CCCATCTCCA CCCAGAAAAC TCCAGAGGCA
  H
  GGTTGTTTCC TTTTAAAGCC ATGTTAGGCC CAAGTAGATG CACTTCTGCA TTTTTAGCAT
  TTAAATAGAA ATGGCTCTCT GGTGGGTTTT CCCCTGCGTT AGTCATGCAA ATGCTCTATG
  CCTCACTTAC CACTCAGTTT CGGTGCCGGG ATGGTTCTTT TGCACGCGTC CTGCTAAGAC
  CCTTCCTCAC CTCCTTGTAT                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47127655	NES11595159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		T	C	C		T
ss322394801	CHEV_7_117309838	CHEVERUD	SCREENING_POP	f	SNP									C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32110485					SNP	C	C	C	C	C	C	C	T	C	T	C	C	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127655	NES11595159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109765531 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	1389 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	1914 bp distal
Rr653201	regulatory region 653201	1400 bp distal
Rr653203	regulatory region 653203	1385 bp distal
Rr653204	regulatory region 653204	1329 bp distal
Rr653205	regulatory region 653205	1330 bp distal
Rr653206	regulatory region 653206	759 bp distal
Rr653207	regulatory region 653207	within coordinates
Rr653208	regulatory region 653208	159 bp proximal
Tssr2367	transcription start site region 2367	1398 bp upstream
Tssr2368	transcription start site region 2368	65 bp upstream
Tssr74253	transcription start site region 74253	1449 bp upstream
Tssr74254	transcription start site region 74254	28 bp downstream