rs32109639 SNP Detail

Summary

• ID
  rs32109639
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACCCGCG TCTGGGAAAT
  TCAGTCAGAA TCAATCCAAG ACCACAATTT AGAGACAGGT AAGCTTGACG GTGGTTGCAG
  CGTTTGGTGA AACAAAACGT CAAGACCAGC CTCTGCTACA TAGAGAATCT GAGGCTATCC
  TGAGTTACAG TGAATCCTGT TTCAGAACAA ATCCCTCAAA GTCCCATTGT CTCTCTGGCC
  W
  TGAAGCTCTT GAGCCCCGGA TCTAGGATAC TGCTTGTTGG ACTAAAGGAC TCACTAATCA
  CCTTTCCCAA CCCTGCCCAG GTATACCACC TCTAGTAAAC AGACTTAACT AGTCTTTGAA
  GGCAGTAGTT CTTTTCAATG AATTCCTATT TATTTATTTT CTTATTTATC ACCGTCTGTA
  AACAGGCTTT GAAGGCAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47127649	NES11595232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32109639					SNP	T	T	T	T	T	T	T	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127649	NES11595232	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764481 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	339 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	864 bp distal
Rr653199	regulatory region 653199	1988 bp distal
Rr653201	regulatory region 653201	350 bp distal
Rr653202	regulatory region 653202	954 bp distal
Rr653203	regulatory region 653203	335 bp distal
Rr653204	regulatory region 653204	279 bp distal
Rr653205	regulatory region 653205	280 bp distal
Rr653206	regulatory region 653206	within coordinates
Rr653207	regulatory region 653207	776 bp proximal
Rr653208	regulatory region 653208	1209 bp proximal
Tssr2367	transcription start site region 2367	348 bp upstream
Tssr2368	transcription start site region 2368	952 bp downstream
Tssr68492	transcription start site region 68492	953 bp downstream
Tssr74253	transcription start site region 74253	399 bp upstream
Tssr74254	transcription start site region 74254	1078 bp downstream