rs32108830 SNP Detail

Summary

• ID
  rs32108830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGCCTTA GGAGCCTAGA
  GTACGGTTTG GTGGTCAAAG TCATGATGAG AAGCAGAGGG TCTGAGGGGT CGGAGGGAAG
  GCACGATGAA CAATATTAGA GAGCATTACT GGAGTTACCG AGGCTAGGCA GTCCGCTGGG
  TTATGCACTA CACCCAAGAA GTCTGCGCCG CCCCGTGGTG CCAGTGCGCA GCCGCAGTCC
  Y
  GTAGCGGGAC CGAGCGTTCC CAGCAGAGGG CACTCACAGA CAGGACATTC CGCAAGCTCT
  TCCTGGGTGA CCCAGGGACT GCACCTGTGG CCTGGGTTTC CCTTGATCAT GCCCTGACAA
  CCCGCGTCTG GGAAATTCAG TCAGAATCAA TCCAAGACCA CAATTTAGAG ACAGGTAAGC
  TTGACGGTGG TTGCAGCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47127640	NES11595317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		T	T	C	T		C
ss322394793	CHEV_7_117308471	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32108830					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47127640	NES11595317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764164 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	22 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	547 bp distal
Rr653199	regulatory region 653199	1671 bp distal
Rr653200	regulatory region 653200	1692 bp distal
Rr653201	regulatory region 653201	33 bp distal
Rr653202	regulatory region 653202	637 bp distal
Rr653203	regulatory region 653203	18 bp distal
Rr653204	regulatory region 653204	within coordinates
Rr653205	regulatory region 653205	16 bp proximal
Rr653206	regulatory region 653206	39 bp proximal
Rr653207	regulatory region 653207	1093 bp proximal
Rr653208	regulatory region 653208	1526 bp proximal
Tssr2367	transcription start site region 2367	31 bp upstream
Tssr2368	transcription start site region 2368	1269 bp downstream
Tssr68492	transcription start site region 68492	636 bp downstream
Tssr74253	transcription start site region 74253	82 bp upstream
Tssr74254	transcription start site region 74254	1395 bp downstream