rs32103847 SNP Detail

Summary

• ID
  rs32103847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:74827474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGGTAC CACCGGGGAC
  CGCCGCCGTG GGCGCATAGC TTGGGACCCC TGTCGTAGTC TCAGAGGAGC AGTTGTGCAG
  CCAAGCCAAG GGCACAGCCG GAGTTGCCAG AGGCCAGCAG CCAGGGTCGT TCTCCCCACC
  AGCCAGAGAC CCGCCCACAG CCCATGAAAC GCCCCGCCTG CAGCCCGCCC CCGCCATCTG
  Y
  GCTCCGCTCC GCCTGCTTGG GTGCATTCAG CCTTTGGTGA TCCTCCAGGA CCTAAGGTTT
  CGGTATTATC TTCGGGGCCT CTTCACCCGG AGGTGAGTCT GCTGAGCCCG ACCTCAGGTG
  TTCACTCGTC ACGCGAGGGC CTGGCCACGG CGGGGAAGCA CTGGGAGAGA GCGGGAGGCC
  TTGACCGCAG CGTGTAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39362890	mCV22970453	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32103847					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74827474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm62552	predicted gene, 62552			93 bp upstream
Ly6e	lymphocyte antigen 6 family member E			Intron
				mRNA-UTR
Rr504405	regulatory region 504405			429 bp distal
Rr504406	regulatory region 504406			104 bp distal
Rr504407	regulatory region 504407			within coordinates
Rr504408	regulatory region 504408			440 bp proximal
Rr504409	regulatory region 504409			1331 bp proximal
Tssr131610	transcription start site region 131610			1428 bp downstream
Tssr131611	transcription start site region 131611			within coordinates
Tssr131612	transcription start site region 131612			15 bp upstream
Tssr131613	transcription start site region 131613			281 bp upstream
Tssr131614	transcription start site region 131614			798 bp upstream
Tssr131615	transcription start site region 131615			1493 bp upstream
Tssr131616	transcription start site region 131616			1525 bp upstream
Tssr131617	transcription start site region 131617			1538 bp upstream
Tssr131618	transcription start site region 131618			1555 bp upstream
Tssr131619	transcription start site region 131619			1591 bp upstream
Tssr131620	transcription start site region 131620			1606 bp upstream
Tssr131621	transcription start site region 131621			1622 bp upstream
Tssr131622	transcription start site region 131622			1844 bp upstream
Tssr131623	transcription start site region 131623			1864 bp upstream
Tssr131624	transcription start site region 131624			1947 bp upstream
Tssr134814	transcription start site region 134814			1559 bp upstream
Tssr134815	transcription start site region 134815			118 bp upstream
Tssr134816	transcription start site region 134816			84 bp upstream