rs32092762 SNP Detail

Summary

• ID
  rs32092762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCTTCA AACCGCTGGG
  CGGAGCCCTA TGGGCGGGGC GTGGGCGGAG CAGTGGCCAG GATCCTGCAG GGGTGGGGGG
  GAAATGGGCG GGCCACAGCT GGGGGCGTGG CCTCAGGCGA GGAAGACAGC GGAGCGCTCT
  AGCTTCCACG GACCGACCAC TAGGGAGCCT GGAGGGCGCT GGGGGCGCGG CCTAGGCTGG
  R
  CAGCGCGGAT TGGCCGGGAG GTCCCCCCGA AGCCACGCCC CTCAGGGGGT GGGCGGGGAA
  GGTCCCTGGA GCCGGAGCCT GACACCGCCT CTCTCCGCGG CGCAGCTGCT GCTGGTTGGG
  TGCCAAGTGA CCTCATGCGG CGGCCCGCCT CGCGCCCTCT CCCCCGCTGC AGCCGCAGGG
  ACTCATCGTC CCCTCCGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45606610	mCV25366100	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32092762					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000295 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	224 bp upstream
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	within coordinates
Rr601975	regulatory region 601975	181 bp distal
Rr601976	regulatory region 601976	1306 bp distal
Rr601977	regulatory region 601977	1260 bp distal
Rr601978	regulatory region 601978	514 bp distal
Rr601979	regulatory region 601979	171 bp distal
Rr601980	regulatory region 601980	within coordinates
Rr601981	regulatory region 601981	124 bp proximal
Rr601982	regulatory region 601982	1560 bp proximal
Tssr39607	transcription start site region 39607	802 bp downstream
Tssr43972	transcription start site region 43972	1816 bp upstream
Tssr43973	transcription start site region 43973	267 bp upstream
Tssr43974	transcription start site region 43974	237 bp upstream
Tssr43975	transcription start site region 43975	211 bp upstream
Tssr43976	transcription start site region 43976	192 bp upstream
Tssr43977	transcription start site region 43977	165 bp upstream