rs32092529 SNP Detail

Summary

• ID
  rs32092529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144919981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAATTGGG GGGGGTAGGT TATGCTCCAG ATATAAAGCC
  AAGAATCTGG GGAGGGGGAC TCCTCGGCAT TTGCTTTCAA GGTCACAAAA ACAATTTTTA
  W
  AAATTTTTAA TCAAAAATGC TTCACAGTGT AAATAAACGT TTCTCTATTG TCATTTCAAC
  AAGGTAAATC TATTAAAAAC ACAATGTGAA GCTGACTAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45606506	mCV22764425	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss147848318	ENSMUSSNP2195414	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	T
ss321412774	CHEV_4_144783314	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32092529					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144919981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398672	regulatory region 398672			1506 bp upstream
Rr604318	regulatory region 604318			194 bp distal
Rr604319	regulatory region 604319			58 bp proximal
Rr604320	regulatory region 604320			937 bp proximal
Rr604321	regulatory region 604321			1584 bp proximal
Rr604322	regulatory region 604322			1676 bp proximal
Tssr44481	transcription start site region 44481			1542 bp downstream
Tssr44482	transcription start site region 44482			1556 bp downstream
Tssr44483	transcription start site region 44483			1588 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant