rs32088617 SNP Detail

Summary

• ID
  rs32088617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120525648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CAGGTGGAAT AGGTTCAGCT
  R
  GTTGGGGTGG AGGTCATTTC AGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45605605	mCV24855331	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss147346036	ENSMUSSNP6003755	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss321286011	CHEV_4_120341056	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32088617					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120525648 () rs orientation: forward

Symbol	Name	Function Class
Cited4	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	631 bp downstream
Cpgi14717	CpG island 14717	756 bp distal
Rr398439	regulatory region 398439	1814 bp downstream
Rr598840	regulatory region 598840	1869 bp distal
Rr598841	regulatory region 598841	280 bp proximal
Rr598842	regulatory region 598842	1100 bp proximal
Rr598843	regulatory region 598843	1996 bp proximal
Tssr38800	transcription start site region 38800	1872 bp downstream
Tssr38801	transcription start site region 38801	1828 bp downstream
Tssr38802	transcription start site region 38802	1508 bp downstream
Tssr38803	transcription start site region 38803	1279 bp downstream