rs32087998 SNP Detail

Summary

• ID
  rs32087998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTACCTG GAAGTCAGTC TTCCACTAAC AGCCTTCAGG
  TGAAAATGTA GAACTCTCAG CTCCTCCTGC ACGATGCCTG CCTGGATGCT GCCATGCTCC
  R
  GCCTTGATGA TAATGGACTG AACCTATGAA CCTATAAACC AGCTCCAATT AAATGTTTTC
  AGCATAAGAG TTGCCTTTGT CGGGCTGGCG AGATGGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45605278	mCV24226697	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss147478224	ENSMUSSNP5207314	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321336792	CHEV_4_132400474	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs32087998					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	1094 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	1390 bp upstream
Rr367719	regulatory region 367719	1287 bp downstream
Rr367720	regulatory region 367720	1100 bp downstream
Rr601096	regulatory region 601096	1447 bp distal
Rr601097	regulatory region 601097	1435 bp distal
Rr601098	regulatory region 601098	900 bp distal
Rr601099	regulatory region 601099	1098 bp distal
Tssr43718	transcription start site region 43718	1614 bp upstream
Tssr43719	transcription start site region 43719	1375 bp upstream