rs32081415 SNP Detail

Summary

• ID
  rs32081415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150279153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACATGA GAGACCTGCC
  TTTCTTTGCC TCCTAAGTGC TGGGACTAAA AGTGTGCACC ACCACTGACT GGCTTGGTTT
  TGTGTTTTTA AGACATGGTC TTATTGTGTA GCTTGGGCTG GTCTAGAACT CCCTACATGG
  GTCATGCTGG CCTCGGATTT GCTGCAATCT GATACTGTTC CCAAGTGCTG GGGTTACAGG
  Y
  TTGCACCTCT ATGATAGATT CCTGGAGTCT GTTCTGTTGG GCTTTTTCTC CTTTATATGG
  ATTATGTGAA GTATTCATAC TACTCTCCTG ATTTCTTCTT TTAACTTTAA TATTAGTGTG
  TGTTTGAATG AGGGTCACAC ATGTCAAGGT CAGAGGACAT CTATGTGGAA TTGGTTCTCT
  ATGCAGATTC AAGGGATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45604930	mCV24961218	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148049927	ENSMUSSNP4474461	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32081415					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150279153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			477 bp distal
Rr605220	regulatory region 605220			563 bp distal
Tssr40386	transcription start site region 40386			1398 bp upstream
Tssr44728	transcription start site region 44728			921 bp upstream
Tssr44729	transcription start site region 44729			1383 bp downstream
Tssr44730	transcription start site region 44730			1413 bp downstream
Tssr44731	transcription start site region 44731			1446 bp downstream