rs32080298 SNP Detail

Summary

• ID
  rs32080298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144132906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG TTGGTATTCT GTCTAAACTC
  Y
  ACCCCCACAG TTCCTTTCAG CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45604622	mCV24102951	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss147823067	ENSMUSSNP1762258	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321408465	CHEV_4_143996239	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32080298					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144132906 () rs orientation: forward

Symbol	Name	Function Class
Pramel13	PRAME like 13	Intron
Pramel13os	PRAME like 13, opposite strand	within coordinates
Rr604225	regulatory region 604225	1458 bp distal
Rr604226	regulatory region 604226	1291 bp distal
Rr604227	regulatory region 604227	1155 bp proximal