rs32077078 SNP Detail

Summary

• ID
  rs32077078
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150133649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGGTG ACAGAGATGT
  GGCCATACCG ACCATTTAAA GCGATTCCAA CTCCGGCGAA GCCTGGCTGG AAAGACGCGG
  CTTCCATCCC GGCAGCCTGG AGGAGGATCG AGCAGGGGCT GTGCCTGGGC TTGCCTGGAC
  TTGTTCAGAG AAGGGCTGCT CCCCTCGGTA ACTGCACAGA TTGGGGGCTT TGGGAGACGT
  W
  GCCAGAACCT GGAAGCCACG GCCGGGGGCT ACTGGGGCCC GGGGTCTGCG CACCTGCTCG
  CCGTGGAGCC CAGGTAAACA CTGAGCCGGT GTGCTTGTCT GTGGGAAAGT GTGCGAAGGA
  GTCGGGAACT AGGCCGAGTA CTTGAGTGGT AATTACAGAG AACTGCTGGG TTGTGCAGCC
  CTGGGAAGGC GAAGAATTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45604747	mCV23448473	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss148045894	ENSMUSSNP4912852	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32077078					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150133649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	within coordinates
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	79 bp upstream
Rr377414	regulatory region 377414	within coordinates
Rr605155	regulatory region 605155	943 bp distal
Rr605156	regulatory region 605156	178 bp distal
Rr605157	regulatory region 605157	within coordinates
Tssr40363	transcription start site region 40363	948 bp downstream
Tssr40364	transcription start site region 40364	900 bp downstream
Tssr40365	transcription start site region 40365	1 bp downstream