rs32071875 SNP Detail

Summary

• ID
  rs32071875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152421866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAACAGA AGTCTTAGGG
  GCTGGTAATG GAGAGTGGGC ATATTCGATT GAGTTTGGGA TTTTCTTTCC TGGACTCTTA
  GTGGTCATGG AGACAAGTGA TCTGGAGAGA GCCAGCAAGC CCTCCCAGGG AGGATGCAAC
  TCAAGCCTCA GCAGTCGGAG GCTCCCCCTG GCAGCAGACA GCCCAGGAAC CATTTGGATC
  Y
  TTAGCCACCT TCCTCCTGCT AGCTGGTCTT TCTGCCTTGT GCAGGGGACA TTTACTGTCC
  AGGGAAGTGT AAAAGTGATC TGTGGTACAG AGGGAGAGTC CTAGTGTCCT GCCTGTCCAT
  CTTGGGAGGC TGGGCAGCCA CGTCAAGAGG TCATGTCATG AGGATACTCA AACCGGCACA
  GATTCATACG GTTCCCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45604187	mCV23462805	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148080974	ENSMUSSNP2289120	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
ss321434226	CHEV_4_151711518	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32071875					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152421866 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	1242 bp upstream
Cpgi15412	CpG island 15412	818 bp proximal
Rr605852	regulatory region 605852	791 bp proximal
Rr605853	regulatory region 605853	1489 bp proximal
Tssr40549	transcription start site region 40549	1210 bp upstream
Tssr40550	transcription start site region 40550	1308 bp upstream
Tssr40551	transcription start site region 40551	1406 bp upstream
Tssr40552	transcription start site region 40552	1505 bp upstream
Tssr40553	transcription start site region 40553	1565 bp upstream