rs32063669 SNP Detail

Summary

• ID
  rs32063669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139343127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CCAAGTGCTG GGATTAAAGG
  Y
  GTGCGCCACC ATGCTCGGTG GGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45603505	mCV22729284	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147676035	ENSMUSSNP1515654	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321382822	CHEV_4_139171731	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32063669					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139343127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15172	CpG island 15172			737 bp distal
Cpgi15173	CpG island 15173			518 bp proximal
Gm21969	predicted gene 21969			Intron
Iffo2	intermediate filament family orphan 2			Intron
				mRNA-UTR
Rr398637	regulatory region 398637			862 bp upstream
Rr603260	regulatory region 603260			1210 bp distal
Rr603261	regulatory region 603261			262 bp proximal