rs32062177 SNP Detail

Summary

• ID
  rs32062177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148021005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGGAAGT GATCTACCGG AGTCACCCGC GGGCAAGTGG
  ACAGATGACC GCAACCCAGC TCCCCGGCTC CCCCCCTTCC AGCCCAGGTC GCCTGGACAC
  Y
  CCGGTCCTCG GCGAGACAGA CGGCCAGGCA CAGCTCCGCC GCCGCGTCCT CACCCTCTAG
  CTTGGCGTCA TCCTTCGCCT GGACCAGAAG AAGCCAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45603289	mCV23034630	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss147987399	ENSMUSSNP6795994	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32062177					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148021005 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15284	CpG island 15284			within coordinates
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1			Intron
				Noncoding-Transcript-Variant
Rr377387	regulatory region 377387			729 bp upstream
Rr604526	regulatory region 604526			167 bp proximal
Rr604527	regulatory region 604527			854 bp proximal
Rr604528	regulatory region 604528			1509 bp proximal
Tssr40234	transcription start site region 40234			265 bp upstream
Tssr44566	transcription start site region 44566			165 bp downstream
Tssr44567	transcription start site region 44567			213 bp downstream