rs32062112 SNP Detail

Summary

• ID
  rs32062112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135671957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA GGCAGGTGGG TTTCTGAGTT
  Y
  GAGGCCAGCC TGGTCTACAG AGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45603398	mCV22566133	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147554539	ENSMUSSNP5829562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321353556	CHEV_4_135500561	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32062112					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135671957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	1629 bp proximal
Gm69275	predicted gene, 69275	1393 bp downstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	1819 bp upstream
Rr602209	regulatory region 602209	823 bp distal
Rr602210	regulatory region 602210	768 bp distal
Rr602211	regulatory region 602211	1010 bp proximal
Rr602212	regulatory region 602212	1721 bp proximal
Rr602213	regulatory region 602213	1813 bp proximal
Tssr39660	transcription start site region 39660	1801 bp upstream
Tssr44007	transcription start site region 44007	1719 bp downstream