rs32059596 SNP Detail

Summary

• ID
  rs32059596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152371408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTCCCCC CCCCCAGGCC
  ACCGATTGAT AGAGTTCCTG CAGTCACCAT GGGTGCCCCA AAATAGTTTC CCCAGACTAG
  ATGGCGGGGT GATGGGGACG TGGGGAGAGA GCTTGAGTCT AAATCCTTGC CTACGTCTCA
  CCACGGTCGC CACACGCGAA ACCCGGGTCT CGTACTCTCG GCCTGGCAGT TTGATGCAGG
  W
  TGTGGTGCCA CAACATCGGT GGAAGACTCA AGGAGACCTC CAGGGAGAGG GAGCGGGGAC
  TGCGGGGAGT GGGAGCCACC TGCAGCGCGA CTGGGGGCCC AGATGGCCGG GAGGCAAGGG
  TTGAGAACAG AGGTCGCCTG TGGGTTGGCG CTGTCCGTGG TGCTGCCTTC CCTGCGCTGG
  AGCAGCAAGG GGCAGCGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45602888	mCV23461125	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss321434070	CHEV_4_151661060	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32059596					SNP	T	T	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152371408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15404	CpG island 15404	within coordinates
Gpr153	G protein-coupled receptor 153	1614 bp downstream
Hes3	hes family bHLH transcription factor 3	Coding-NonSynonymous
Rr605827	regulatory region 605827	1235 bp distal
Rr605828	regulatory region 605828	1644 bp proximal
Tssr44825	transcription start site region 44825	1119 bp downstream