rs32057090 SNP Detail

Summary

• ID
  rs32057090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75944398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCATTCATTT ATTTATAAGG TTATTGCAGA ATTTCTGAGC TGTGACAAGG ATCAATACTG
  CAAGAAGAGA AAAGAAAGAA ACAAGGAAAT CAATGCCCCA CTTGCACAAT AACATCCACC
  ATTACCAACA ATTAGTCTGA AAATTTTATT CTCCTGATGA CAAGGACATC AATTAATTCC
  TTGGAGAAGG GGGGTAAATT CCCACCTTCC CAGCGACAGC ACCCTAGCTT CTCTGAATTC
  AAAGGGAGGC AGCATGTCAC CGCTCATTAA CTATACTAAT TACACTTCCT CAGTCACTGC
  R
  GCGGCAGTTC TGCTCTCTGG GTAGAGACAG CCCTGAGCAG ACAGAGCCTA GAGGAGGGGC
  ACTCCACAAT GGGAAACCAA AAGGGCAGGC TGATCTCTGC AACATCCACT TTAAATCTTA
  TTTTGTACTA ATCTTGTAAA CTAAATACGG GACGCAGGAA GGTAGACCAA AAGGCTTCCC
  ACCCAAACCG CCTCCTCCTG AGGCGTTTGT CCTTTTTCCA GCTCCTTATG TGCCACTTGA
  CACACTTACA TGGAACTAAA AGCTGGAGTC TCAGCAAAAT ATATACTATC ACCAAACCTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45602215	mCV24419744	ABI	CRAMUS_MOUSE	f	SNP	A	A	A			G
ss47700768	NES10225861	PERLEGEN	MM_PANEL2	r	SNP				C	C		C	T	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32057090					SNP	A	A	A	G	G	G	G	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47700768	NES10225861	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75944398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594066	regulatory region 594066			1500 bp distal
Rr594067	regulatory region 594067			within coordinates