rs32057085 SNP Detail

Summary

• ID
  rs32057085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129940153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG TGCAAATGGA ATTAGAGATA
  M
  AAAGTAGATT TGAACCAGGC CTGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45602207	mCV22593188	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss147458137	ENSMUSSNP3012609	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321316720	CHEV_4_129723604	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32057085					SNP	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129940153 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1485 bp upstream
Cpgi14918	CpG island 14918	363 bp distal
Cpgi14919	CpG island 14919	963 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600418	regulatory region 600418	1777 bp distal
Rr600419	regulatory region 600419	245 bp distal
Rr600420	regulatory region 600420	699 bp distal
Rr600421	regulatory region 600421	633 bp proximal
Rr600422	regulatory region 600422	1389 bp proximal
Rr600423	regulatory region 600423	1491 bp proximal
Tssr1308	transcription start site region 1308	1186 bp upstream
Tssr39217	transcription start site region 39217	1000 bp upstream
Tssr39218	transcription start site region 39218	1496 bp upstream
Tssr39219	transcription start site region 39219	1554 bp upstream