rs32051565 SNP Detail

Summary

• ID
  rs32051565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119692480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACCCAA TCCAAAGTGA
  TGAGCCCTAA GCAGGTGCTC CTATGAGCAG CACCAAGTGG AATCAGCAGG CTGTATTTTT
  ATAAACATAC ACAGACATAT GTAACAATAG TTAATGAAGA GATCATGAAT TTGAGAGGGA
  GTGGAGAGGA CACAGACATT AGATGGAGAG GGGGAGGGGT GGGAGTAATG TGCATATAAC
  K
  CTCATGTATA AAATTCTCAA AAAACAAAAT AAACGAAAAC AAAAACTCCA GTCGGTCTAG
  TTCCTAGTCG TTGCCTTTGC CCTCCTGGAT GAGCTCAGGG CACGGCATCC CTGCTGAGTA
  CTCGGACTAC TCTCCCCTCC CCTTTCTCTT GGCTGGGAAG ACATCTGGGA GAATTGTGAT
  CTATACACGC CCCAGATCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45601234	mCV25416256	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32051565					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119692480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			262 bp downstream
Rr598660	regulatory region 598660			650 bp distal