rs32050494 SNP Detail

Summary

• ID
  rs32050494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149238844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC ACCAAGGGCT GAGTGCTTTG
  R
  CCTGGGTTAT GGGGAAGGGC CACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45601796	mCV22641314	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				A		G
ss46700499	NES10944848	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A		A	G	A	A		A	G	A	G		A
ss148029171	ENSMUSSNP4549409	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321425102	CHEV_4_148528496	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32050494					SNP	A	A	A	G	A	A	A	A	G	A	A	G	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46700499	NES10944848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149238844 () rs orientation: forward

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Intron
Rr604846	regulatory region 604846	644 bp proximal
Rr604847	regulatory region 604847	1036 bp proximal
Rr604848	regulatory region 604848	1358 bp proximal
Tssr44628	transcription start site region 44628	403 bp upstream
Tssr44629	transcription start site region 44629	156 bp upstream