rs32049878 SNP Detail

Summary

• ID
  rs32049878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152412308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGGGCA GTCCCCACTT
  TTTCATTTAA CCAGAGCCAG GGCAGATTAA GTATTTGTTG CTGCATCTCT TGAGATAGAA
  GTATAATGGC AGGCTGTGAC ATACAGGTGA CAGAGCTAGC TGTTCTGTCT TGATGACCTT
  AACCCTGAAT CAGGCGACCA CCACGGGTCT GTATGGGCCC ACTCTCTGTC TGGGCGGCCT
  Y
  GTCGTGGTCA CGGGCCTCCG AATCCTCAGG TAGATGGCAG CAGCTCGCCA GCACGGATGC
  CTGAGTTGGG CTTCAGTCTG CTTACCTGGG GTGGGGCTTC TTTTTTCCCC ATACTCTGCT
  ATCCCCGAGG CTCCCCCTCA TTAAACCGTT TTTAAAGATT TTTATCTTTA AAATTCTGTG
  TATGTACGTT GGCTGCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45601407	mCV23462475	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148080865	ENSMUSSNP6493057	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321434200	CHEV_4_151701960	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32049878					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152412308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15411	CpG island 15411			1260 bp distal
Rpl22	ribosomal protein L22			Intron
				Noncoding-Transcript-Variant
Rr605841	regulatory region 605841			1972 bp distal
Rr605842	regulatory region 605842			1146 bp distal
Rr605843	regulatory region 605843			1546 bp distal
Rr605844	regulatory region 605844			905 bp proximal
Rr605845	regulatory region 605845			1019 bp proximal
Tssr40547	transcription start site region 40547			1975 bp downstream