rs32049542 SNP Detail

Summary

• ID
  rs32049542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118976142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGCCT CATAAGTCCC
  ACTGGTCACC TGATGACTCT TGGCTCGGCT GTGGCTCCCA GAAGCTTGTC ATGTACTCCC
  TGCCCACTCA CCCCGCAGCA CTGGGTCTGG AGGCTCCCTA GAGAGCTGGG AGACAGGAGA
  TGTGAGAGGC CATGCCTTTT GACTGAGTTC ACAGAGGATG GGAGTTGAAG GGAAGTGGCG
  Y
  AGTAAAGAAT GACTTTGCAA GGTCAGTCAA GGAGAAACAG ACAGACAGAC CATTCGAAGG
  CAGGCTCCAA CATTCTGTGT CCACTGGAGC AGACACAGGC CTTCCTCTTT CTCAGAGTTT
  CATGTGAGAA CTATAGCTTT GGCAGTCCTT GTCTTTCAGG CTTCTGGAAA ATGAGAAGAC
  CTGGGAACAA GTCTGCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45601793	mCV22646014	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147324306	ENSMUSSNP6757482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32049542					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118976142 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	1338 bp upstream
Rr598494	regulatory region 598494	1874 bp distal
Rr598496	regulatory region 598496	within coordinates
Rr598497	regulatory region 598497	1866 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	1469 bp upstream