rs32049493 SNP Detail

Summary

• ID
  rs32049493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152362644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGCTGG AGAGATGGCT
  CAGTTAAGAA CACTTGCTAC TCTTCCAGAC CACCTGTGTT CAGTTCCCAG CATCCCTCAA
  GTGGCTCAAC TGCCTAGTTC CAGGGGATCT GACGCCCTCT TCTGGGCTCT GAAGGTATCT
  GCATGCATGT GGTACACACC CTTAACGGTC AGGCCCACTG TGGCTGGAGA GACTGCTCAG
  Y
  GGTTAAGAGC ACCAACTACT TACTCTTCCA GAGGTCCTGA GTTTAGTTCC CAGCAACCAC
  ATGGTGGCTC ACATCACATG ATGGGATCTG CTGCCCTCTT CTGGTGTGTC TGAAGATACC
  TGTAGTGTAC ATGTCCATAA ATAAATAAAT AAACCTTAAA AAGAAAAAAA AAGATGCTTT
  AAAAAAAAAA GATTTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45601697	mCV23461056	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148080263	ENSMUSSNP2042406	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss321434052	CHEV_4_151652296	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32049493					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152362644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15402	CpG island 15402	917 bp proximal
Gpr153	G protein-coupled receptor 153	Intron
Rr605819	regulatory region 605819	1354 bp distal
Rr605820	regulatory region 605820	1639 bp distal
Rr605821	regulatory region 605821	274 bp distal
Rr605822	regulatory region 605822	71 bp distal
Rr605823	regulatory region 605823	88 bp proximal
Rr605824	regulatory region 605824	631 bp proximal