rs32044943 SNP Detail

Summary

• ID
  rs32044943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152409186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTCCGT GGTGCCGGAG
  CAGAAAGGTT CGTAGCATCA CAAAGCCAAG GCTGTTCATG CCTGTAATCT CAGAATTTGG
  ACGAATGAAT GAGGCAGGAG AATGCTGAGT CTAAGACCAG CTTGGGGTAG ACAGTGCTCT
  CCAGGCCAGC CCTGGTCTAA GGAATGATAC TGAGTGAGAC TCTGTCTCAA CCACACCAAA
  Y
  CAAGACAAAG GTAACCAAAC CAAGCAGGAG AGAAAGCAGC AGGCGGCTTT AAAGTCAGAT
  GAGCAAGCAG AGACACTGAC TTTAGCTTGA CCAATCAGCA TGGTGTGTTT CCTTGAAGGG
  TTGTAAGTCA AAGCTGGGCT TTTCCGGAGT CCGAGTAACA AAACTGGATG GTGTGGTCAC
  AGTTCAGGAT CCTGCAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45600914	mCV23462462	ABI	CRAMUS_MOUSE	f	SNP		C	T			T	T
ss46738230	NES11003820	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T		T	T	T		C	T	C	C		C
ss148080830	ENSMUSSNP3110317	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
ss321434192	CHEV_4_151698838	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32044943					SNP	C	C	T	T	T	T	T	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738230	NES11003820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152409186 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	4 bp upstream
Cpgi15411	CpG island 15411	824 bp proximal
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	816 bp upstream
Rr605841	regulatory region 605841	634 bp proximal
Rr605842	regulatory region 605842	1151 bp proximal
Rr605843	regulatory region 605843	1555 bp proximal
Tssr40547	transcription start site region 40547	1102 bp upstream