rs32041040 SNP Detail

Summary

• ID
  rs32041040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137393998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG AGGGAGGGAA TCAGGGAAAG
  Y
  CTTGCCTTCC ACTCGGCTCC TGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45600436	mCV24784333	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss147615574	ENSMUSSNP5592024	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321366192	CHEV_4_137222602	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32041040					SNP	C	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137393998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15133	CpG island 15133			1255 bp distal
Gm54263	predicted gene, 54263			1881 bp upstream
Rap1gap	Rap1 GTPase-activating protein			Intron
				Noncoding-Transcript-Variant
Rr602670	regulatory region 602670			1099 bp distal
Rr602671	regulatory region 602671			873 bp proximal
Rr602672	regulatory region 602672			1749 bp proximal
Tssr39770	transcription start site region 39770			1900 bp downstream
Tssr44130	transcription start site region 44130			328 bp upstream