rs32028273 SNP Detail

Summary

• ID
  rs32028273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTCTGT TAGGCGCGGC
  CGCCTTTTCC TGGAAAACTT TTGCGAAAGT TTTCATGTCC TTAAGAACTT TTTAATCCTT
  CTGACCGCGG ATCTCCTTTC GTGATCCTTC TCTATTTGAA ATCAAGATAC TCAAAAGTTC
  TTGTAAAGTC GTCCTGTGTC CCGGGCTCTG AATTAGGCCA AAACGGTGGG ACAGCGTCCC
  R
  CTCCAGCACA ACCCCAGTGC TTGAGGCAGC GCCTGACTCT GAAAACGTTA TCCGTGCTGT
  TTTGCCCCAC CTGGACCGAT TCCTGTCTTC CGTTCACCTG GAGAAGTTTA ATGAGTCACC
  TGAGTGCCAC TCAGCGCGCA GGGGCGAGTA CTTTACACCC TGAGGACAGG GGCCTGAGAC
  ACGCGGTCTA CTGCGGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45598799	mCV25366087	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147543305	ENSMUSSNP3622893	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32028273					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000718 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	647 bp upstream
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	216 bp downstream
Rr601975	regulatory region 601975	604 bp distal
Rr601976	regulatory region 601976	1729 bp distal
Rr601977	regulatory region 601977	1683 bp distal
Rr601978	regulatory region 601978	937 bp distal
Rr601979	regulatory region 601979	594 bp distal
Rr601980	regulatory region 601980	103 bp distal
Rr601981	regulatory region 601981	278 bp distal
Rr601982	regulatory region 601982	1137 bp proximal
Tssr39607	transcription start site region 39607	1225 bp downstream
Tssr43973	transcription start site region 43973	690 bp upstream
Tssr43974	transcription start site region 43974	660 bp upstream
Tssr43975	transcription start site region 43975	634 bp upstream
Tssr43976	transcription start site region 43976	615 bp upstream
Tssr43977	transcription start site region 43977	588 bp upstream