rs32023873 SNP Detail

Summary

• ID
  rs32023873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48531855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGGTCC AGAGCTGGCT
  GGCTAGGACT CGAGGGCTCC CCGCCATCCC CAGCTTGGTG CCACGTCAAC CGGGTCTGCT
  CACCTGCCCT CTGGACCCTA GCGACACCGT TCCCTCTGCG ACCCTTTGCA TGACTGCTTA
  GCAGCTTCTG CTCCACGGTT TCCAGAAAGA AACGTGTGAG GAGGAAAGAG CTTCGTTGTC
  Y
  GAAGCCCAAG GATGCGGGGC GTTGGCCGAT CTCTGAACAC GCAGGTGTGG GAGGAGGGAG
  AGAAACTCAG AAAACCCGCC AAGCCTGTCC CCAGTGTCCT GCGTCTGCCG ATCCCCTCTT
  TGCTCTTTCC CGCTTTTCTT CCTTTTCCTT TTATGAGCTT CTGACATCGG CCTGGTATAT
  CGAACAGGTC AAGGGAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46095928	mCV23857807	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T	T
ss149208208	ENSMUSSNP1218304	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32023873					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48531855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	within coordinates
E2f8	E2F transcription factor 8	511 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	860 bp downstream
Rr400336	regulatory region 400336	157 bp downstream
Rr646937	regulatory region 646937	1077 bp distal
Rr646938	regulatory region 646938	723 bp distal
Rr646939	regulatory region 646939	522 bp distal
Rr646940	regulatory region 646940	21 bp distal
Tssr66768	transcription start site region 66768	742 bp downstream
Tssr66769	transcription start site region 66769	241 bp downstream
Tssr72630	transcription start site region 72630	1117 bp upstream
Tssr72631	transcription start site region 72631	1077 bp upstream
Tssr72632	transcription start site region 72632	1057 bp upstream
Tssr72633	transcription start site region 72633	488 bp upstream
Tssr72634	transcription start site region 72634	436 bp upstream
Tssr72635	transcription start site region 72635	244 bp downstream
Tssr72636	transcription start site region 72636	1228 bp downstream