rs32019237 SNP Detail

Summary

• ID
  rs32019237
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43981927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGGCATC ACATCCAAAG AGACTATCTG CCCCAGAAGT
  CAGGTATCAA GATGTGTAAC TTCACTATTA AAGTATAATT GTTTAAAAAA AAAAAAAAAA
  M
  AAAACTTCAA TTAATCCTAG CACCTGAGAG GCAGAGACAG GTAGATCTCT TGAGTTCAAG
  GCCAGCCTAG TTTACATAGA GGTTCCAGGA CAGCCAAGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45597384	mCV23628803	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss321099691	CHEV_4_43994799	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32019237					SNP	C	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43981927 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1556 bp upstream
Rr398234	regulatory region 398234	566 bp upstream
Rr591125	regulatory region 591125	1685 bp distal
Rr591126	regulatory region 591126	145 bp proximal
Rr591127	regulatory region 591127	642 bp proximal
Tssr37010	transcription start site region 37010	1546 bp upstream
Tssr37011	transcription start site region 37011	1569 bp upstream