rs32008232 SNP Detail

Summary

• ID
  rs32008232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135749628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TTCTTTCTTT CTCTCTTTCT
  Y
  TTTATTTCTT TTCTCAAAAA GGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45596730	mCV24785974	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147556008	ENSMUSSNP2953	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321353739	CHEV_4_135578232	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32008232					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135749628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	203 bp distal
Eloa	elongin A	668 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	345 bp downstream
Rr602239	regulatory region 602239	565 bp distal
Rr602240	regulatory region 602240	306 bp distal
Rr602241	regulatory region 602241	116 bp distal
Tssr44023	transcription start site region 44023	652 bp upstream
Tssr44024	transcription start site region 44024	623 bp upstream
Tssr44025	transcription start site region 44025	581 bp upstream