rs32005665 SNP Detail

Summary

• ID
  rs32005665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148243163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG TCTCGCCAGA GGCTGCAGAC
  S
  GGTCGGCAGC GCAGCAGCAG TTGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45597087	mCV24710888	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147994686	ENSMUSSNP6378828	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss321417735	CHEV_4_147532815	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32005665					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148243163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			841 bp proximal
Fbxo2	F-box protein 2			1915 bp upstream
Fbxo44	F-box protein 44			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr398857	regulatory region 398857			1322 bp upstream
Rr604608	regulatory region 604608			879 bp proximal
Rr604609	regulatory region 604609			1926 bp proximal
Tssr40263	transcription start site region 40263			1441 bp upstream
Tssr40264	transcription start site region 40264			1907 bp upstream
Tssr40265	transcription start site region 40265			1925 bp upstream
Tssr40266	transcription start site region 40266			1950 bp upstream
Tssr44596	transcription start site region 44596			865 bp downstream
Tssr44597	transcription start site region 44597			1102 bp downstream
Tssr44598	transcription start site region 44598			1114 bp downstream
Tssr44599	transcription start site region 44599			1132 bp downstream
Tssr44600	transcription start site region 44600			1325 bp downstream